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Agostino Moosdorf
mdccrn
Commits
7e6d261c
Commit
7e6d261c
authored
Oct 06, 2021
by
moosdorf
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updated readme
parent
84336d50
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README.md
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@@ -31,7 +31,7 @@ create a dedicated directory for every chemical reaction network. This is howeve
Currently implemented are mode 0, which checks for monoticity among the species and reaction rates, and mode 1,
which ignores the reaction rates for performance gain. The default mode is 0.
\
The syntax for the latter is as follows (from within the bin/linux/ folder):
\
`./mdccrn_command_line <input file> <output directory> <model name> <mode (optional)>`
`./mdccrn_command_line <input file> <output directory> <model name> <mode (optional)>`
\
Usage Example:
\
`./mdccrn_command_line ../../input/input_example_1.txt ../../output model1`
-
Note that the computational cost for calculating every graph with the required monoticity characteristics rises exponentially
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@@ -40,7 +40,7 @@ when increasing the amount of species or reactions within the CRN. See below for
## PERFORMANCE
The following data will give you an impression of how long the calculations may take.
It springs from testing various input examples on my laptop with 4
M
B RAM and an AMD A8-6410 APU.
It springs from testing various input examples on my laptop with 4
G
B RAM and an AMD A8-6410 APU.
The UNIX time command was used to determine execution time.
| name | number reaction rates | number species | number reactions | number transformations checked | execution time | number consistent graphs |
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